Publications

Publications and Conference Proceedings

  1. Joe D Taylor, Michael Cunliffe (2016). Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance, Nature, Nature Publishing Group
  2. Silvia Peppoloni, Giuseppe Di Capua, and Florian Haslinger (2016). ENVRI PLUS project: Developing an ethical framework for Environmental and Earth System Research Infrastructures, Geophysical Research Abstracts
  3. R. Filguiera, A. Krause, M. Atkinson, I. Klampanos, A. Moreno (2016). dispel4py: A Python framework for data-intensive scientific computing, International Journal of High Performance Computing Applications
  4. Amrey Krause, Rosa Filgueira, Malcolm Atkinson (2015). dispel4py – a Python framework for data-intensive eScience, Proceedings of the 5th Workshop on Python for High-Performance and Scientific Computing – PyHPC ’15
  5. Paul Martin, Arie Taal, Francisco Quevedo, David Rogers, Kieran Evans, Andrew Jones, Vlado Stankovski, Salman Taherizadeh, Jernej Trnkoczy, George Suciu, Zhiming Zhao (2016). Information Modelling and Semantic Linking for a Software Workbench for Interactive, Time Critical and Self-Adaptive Cloud Applications, 2016 30th International Conference on Advanced Information Networking and Applications Workshops (WAINA)
  6. Paul Martin, Paola Grosso, Barbara Magagna, Herbert Schentz, Yin Chen, Alex Hardisty, Wouter Los, Keith Jeffery, Cees de Laat, Zhiming Zhao (2015). Open Information Linking for Environmental Research Infrastructures, 2015 IEEE 11th International Conference on e-Science
  7. Gary A. McGilvary, Malcolm Atkinson, Sandra Gesing, Alvaro Aguilera, Richard Grunzke, Eva Sciacca (2015). Enhanced Usability of Managing Workflows in an Industrial Data Gateway, 2015 IEEE 11th International Conference on e-Science
  8. Gary A. McGilvary, Adam Barker, Malcolm Atkinson (2015). Ad Hoc Cloud Computing, 2015 IEEE 8th International Conference on Cloud Computing
  9. Zaldei, A., Vagnoli, C., Di Lonardo, S., Gioli, B., Gualtieri, G., Toscano, P., Martelli, F., Matese, A. (2016). AIRQino, a low-cost air quality mobile platform, Geophysical Research Abstracts
  10. Matese, A., Di Gennaro, S.F., Zaldei, A.  (2015). Agrometeorological monitoring: Low-cost and open-source – Is it possible?, Italian Journal of Agrometeorology
  11. Zaldei A., Camilli F., De Filippis T., Di Gennaro F., Di Lonardo S., Dini F., Gioli B., Gualtieri G., Matese A. (2016). An integrated low-cost road traffic and air pollution monitoring platform for next citizen observatories, Transportation Research Procedia
  12. M. Assante, L. Candela, D. Castelli, G.Coro, L. Lelii, P. Pagano (2016). Virtual Research Environments as-a-Service by gCube. 8th International Workshop on Science Gateways (IWSG 2016)
  13. Rosa Filgueira, Amrey Krause, Malcolm Atkinson, Iraklis Klampanos, Alessandro Spinuso, Susana Sanchez-Exposito (2015). dispel4py: An Agile Framework for Data-Intensive eScience, 2015 IEEE 11th International Conference on e-Science
  14. Ryan Mork, Paul Martin, Zhiming Zhao (2015). Contemporary challenges for data-intensive scientific workflow management systems. Proceedings of the 10th Workshop on Workflows in Support of Large-Scale Science – WORKS ’15
  15. Filgueira Vicente, R., Krause, A., Atkinson, M., Spinuso, A., Klampanos, I., Magnoni, F., Casarotti, E. & Vilotte, J-P. (2015). dispel4py : An Open Source Python Framework for Encoding, Mapping and Reusing Seismic Continuous Data Streams: Intensive Analysis and Data Mining, American Geoscience Union Fall Meeting Abstracts
  16. Spinuso, A, Filgueira Vicente, R, Atkinson, M & Gemuend, A (2016). Visualisation methods for large provenance collections in data-intensive collaborative platforms, Geophysical Research Abstracts
  17. Filgueira Vicente, R., Atkinson, M. & Krause, A. (2016). dispel4py: An Agile Framework for Data-Intensive methods using HPC, Conquering Big Data Using High Performance Computing
  18. Zhiming Zhao, Paul Martin, Junchao Wang, Ari Taal, Andrew Jones, Ian Taylor, Vlado Stankovski, Ignacio Garcia Vega, George Suciu, Alexandre Ulisses, Cees de Laat (2015). Developing and Operating Time Critical Applications in Clouds: The State of the Art and the SWITCH Approach, Procedia Computer Science
  19. Ole Weidner, Malcolm Atkinson, Adam Barker, Rosa Filgueira Vicente (2016). Rethinking High Performance Computing Platforms – Challenges, Opportunities and Recommendations, Proceedings of the ACM International Workshop on Data-Intensive Distributed Computing – DIDC ’16
  20. Zhiming Zhao, Paul Martin, Paola Grosso, Wouter Los, Cees de Laat, Keith Jeffrey, Alex Hardisty, Alex Vermeulen, Donatella Castelli, Yannick Legre, Werner Kutsch (2015). Reference Model Guided System Design and Implementation for Interoperable Environmental Research Infrastructures, 2015 IEEE 11th International Conference on e-Science
  21. Werner Leo Kutsch, Ari Asmi, Paolo Laj, Magdalena Brus, and Sanna Sorvari (2016). Environmental Research Infrastructures providing shared solutions for
    science and society (ENVRIplus), Geophysical Research Abstracts
  22. Sanna Sorvari, Werner Kutsch, Paolo Laj, Ari Asmi, and Magdalena Brus (2016). ENVRI Cluster – a community-driven platform of European environmental research infrastructures for providing common solution for science and society. Geophysical Research Abstracts.
  23. M. Brus, A. Asmi, W. Kutsch, P. Laj and S. Sorvari (2016). ENVRIplus – Environmental research infrastructures providing shared solutions for science and society, Proceedings of the 2nd Pan-Eurasian Experiment (PEEX) Conference and the 6th PEEX Meeting
  24. Jean-Daniel Paris (2016). Common Technologies for Environmental Research Infrastructures in
    ENVRIplus. Geophysical Research Abstracts.
  25. Veloso, M.,et al., M. (2015): A new methodology for quantifying bubble flow rates in deep water using splitbeam echosounders: Examples from the Arctic offshore NW-Svalbard. Limnol. Oceanogr.: Methods, doi: 10.1002/lom3.10024
  26. Assante, L. Candela, D. Castelli, G.Coro, L. Lelii, P. Pagano (2016) Virtual Research Environments as-a-Service by gCube. 8th International Workshop on Science Gateways (IWSG 2016), 8-10 June 2016
  27. Zhou, H., Hu Y., Wang, J., Martin, P., Su, J., de Laat, C. and Zhao, Z., (2016) Fast Resource Co-provisioning for Time Critical Application Based on Networked Infrastructure, IEEE International Conference on CLOUD (CLOUD) 2016, San Francisco US
  28. Zhou, H., Hu Y., Wang, J., Martin, P., de Laat, C. and Zhao, Z. (2016). Fast and Dynamic Resource Provisioning for Quality Critical Cloud Applications, IEEE International Symposium On Realtime Computing (ISORC)
  29. Martin, P., Chen, Y. Hardisty, A., Jeffery, K., and Zhao, Z. (2017). Computational Challenges in Global Environmental Research Infrastructures. In Terrestrial Ecosystem Research Infrastructures: Challenges, New developments and Perspectives, edited by Chabbi A., Loescher H. W. CRC press.
  30. Herrmann, J. D. Zechar, & S. Wiemer, 2016. Communicating time-varying seismic risk during an earthquake sequence, Seismological Research Letters, 87 (2A), 301-311. doi:10.1785/0220150168
  31. D. Zechar, W. Marzocchi, & S. Wiemer, 2016. Operational earthquake forecasting in Europe: progress, despite challenges, Bulletin of Earthquake Engineering (2016) 14:2459. doi:10.1007/s10518-016-9930-7
  32. Berchet, A., et al.: Atmospheric constraints on the methane emissions from the East Siberian Shelf, Atmospheric Chemistry and Physics, 16, 4147-4157, doi:10.5194/acp-16-4147-2016, 2016. ** Asked to add publisher and publishing place, but was unable to find information. I put “?” in the fields.
  33. Yver Kwok, C., et al., Comprehensive laboratory and field testing of cavity ring-down spectroscopy analyzers measuring H2O, CO2, CH4 and CO, Atmospheric Measurement Techniques, 8, 3867-3892, doi:10.5194/amt-8-3867-2015, 2015
  34. Atkinson, M., Bell, A., Curtis, A., Entwistle, E., Filgueira, R., Krause, A., Main, I., Meles, G., Miniter, M. & Zhao, Y. (2015). The Terracorrelator: a shared memory HPC facility for realtime seismological cross-correlation analyses, Geophysical Research Abstracts: European Geosciences Union General Assembly
  35. Stocker, M. (2017). Advancing the Software Systems of Environmental Knowledge Infrastructures. In Terrestrial Ecosystem Research Infrastructures: Challenges, New developments and Perspectives, edited by Chabbi A., Loescher H. W. CRC press, 2017
  36. Malcolm Atkinson, Michele Carpene, Emanuele Casarotti, Steffen Claus, Rosa Filgueira, Anton Frank, Michelle Galea, Tom Garth, Andre Gemund, Heiner Igel, Iraklis Klampanos, Amrey Krause, Lion Krischer, Siew Hoon Leong, Federica Magnoni, Jonas Matser, Alberto Michelini, Andreas Rietbrock, Horst Schwichtenberg, Alessandro Spinuso, Jean-Pierre Vilotte (2015). VERCE Delivers a Productive E-science Environment for Seismology Research, 2015 IEEE 11th International Conference on e-Science
  37. Klump, J., Huber, R., and Lehnert, K. (2016). 20 Years of persistent identifiers – Which systems are here to stay?, Geophysical Research Abstracts
  38. Ryan Mork, Paul Martin, Zhiming Zhao (2016). Contemporary challenges for data-intensive scientific workflow management systems, Proceedings of the 10th Workshop on Workflows in Support of Large-Scale Science – WORKS ’15
  39. Jens Klump, Robert Huber, Michael Diepenbroek (2016). DOI for geoscience data – how early practices shape present perceptions, Earth Science Informatics
  40. Spinuso, A., Filgueira Vicente, R., Krause, A., Matser, J., Casarotti, E., Magnoni, F., Gemünd, A., Frobert, L., Krischer, L. & Atkinson, M.  (2015). The VERCE platform: Enabling Computational Seismology via Streaming Workflows and Science Gateways. A Forecasting Model Testing Centre, Geophysical Research Abstracts
  41. Nicola Arriga , Üllar Rannik , Marc Aubinet , Arnaud Carrara , Timo Vesala, Dario Papale (2017). Experimental validation of footprint models for eddy covariance CO2 flux measurements above grassland by means of natural and artificial tracers. Agricultural and Forest Meteorology
    Volume 242, 15 August 2017, Pages 75-84.
  42. Acosta, Carlos (2017). From reference model and system requirements to architecture design recommendations: an expert system approach. Thesis/Dissertation
  43. Asmi, A., Brus, M., Sorvari S. (2017).  Community-Driven Efforts for Joint Development of Environmental Research Infrastructures, In Terrestrial Ecosystem Research Infrastructures: Challenges, New developments and Perspectives, edited by Chabbi A., Loescher H. W. CRC press.

Popularised Publications (Non peer-reviewed)

  1. Magdalena Brus (2015) ENVRIplus – Environmental Research Infrastructures providing shared solutions for science and society, ICOS Newsletter
  2. Zhiming Zhao (2016) Data for Science: software and solutions for the environmental sciences, EGI –Inspired, Newsletter No 22
  3. Elodie Parisot (2015) A new cluster for environmental and earth system research infrastructures in Europe, AnaEE Newsletter, No 10
  4. Magdalena Brus (2016) The virtual platform for ENVRI community, April 2016 EGI –Inspired, Newsletter No 23

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